Focus meeting: NGS production pipelines

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Time & Location

13:00-17:00, April 15th, 2014

cursus -en vergadercentrum Domstad, Koningsbergerstraat 9, Utrecht

Agenda

Agenda
Time slot Speaker Subject
12:45-13:00
Coffee/tea
13:00-13:20
Leon Mei (LUMC) Introduction, landscape of NGS groups, requirement of NGS production pipelines ( slides )
13:20-13:50 Wibowo Arindrarto (LUMC) Pushing the limit of GNU Make to implement NGS production pipeline ( slides )
13:50-14:20 Freerk van Dijk (UMCG) Molgenis-compute based pipelines ( slides )
14:20-14:30
-
Tea break
14:30-15:00 Johannes Köster (TU Dortmund) Snakemake features, current status, roadmap ( slides )
15:30-16:00 Pjotr Prins (UMCU) Status, ideas, roadmap from bioinformatics open source community ( slides )
16:00-16:10
-
Tea break
16:10-16:40 Mahdi Jaghouri (AMC) Implementing data analysis pipelines using more advanced workflow engines ( slides )
16:40-17:00 Leon Mei (LUMC) Conclusion

Summary

Here is a white paper written by Leon Mei (LUMC) about this focus meeting.