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<?xml version="1.0"?>
<api>
  <query-continue>
    <allpages gapcontinue="Template_Agenda_DTL_Programmers_Meeting" />
  </query-continue>
  <query>
    <pages>
      <page pageid="51" ns="0" title="Software and data currently hosted by DISC Partners">
        <revisions>
          <rev contentformat="text/x-wiki" contentmodel="wikitext" xml:space="preserve">This is a (live?) list of software and data that is currently hosted by DISC partners. At some point this will probably be turned into a table...

== NAME ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  SubFIELD &amp; DISC COLOR 
* Hosted by: WHO
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: WHO PAYS UNTIL WHEN, is renewal needed?
* SLA: WHAT ARE NEEDS?

== DVD ==

* Software: Diagnostic Variant Database
* Short description: A database of variants observed in the human genome in different experiments
* Field: Next Generation Sequencing, Health
* Hosted by: UMCG
* Resources: 
* Access: Database searches only by project partners.
* Funding position: Volunteered by UMCG. Should be made explicit.
* SLA: WHAT ARE NEEDS?

== GoNL ==

* Data: GoNL
* Short description: 750 fully sequenced human genomes from 250 triplets of father/mother/child.
* Field:  Next Generation Sequencing and Biobanking, Health
* Hosted by: UMCG
* Resources:  400 TB Disc Space
* Access: Project partners can have access.
* Funding position: Volunteered by UMCG. Should be made explicit.
* SLA: WHAT ARE NEEDS?

== NMC DSP ==

* Software: NMC Data Support Platform
* Short description: Workflow system developed for metabolomics studies
* Field: Metabolomics &amp; any application 
* Hosted by: NBIC
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: Public service.
* Funding position: NBIC pays untill end 2013. Discussion in NMC is going for the future.

== NBIC Trac ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  SubFIELD &amp; DISC COLOR 
* Hosted by: WHO
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: NBIC has pre-paid for 5 years, is renewal needed?
* SLA: WHAT ARE NEEDS?

== NBIC Wiki &quot;BioAssist&quot; ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  SubFIELD &amp; DISC COLOR 
* Hosted by: SARA
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: SARA pays.
* SLA: WHAT ARE NEEDS?

== Open PHACTS Wiki ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  SubFIELD &amp; DISC COLOR 
* Hosted by: Procolix
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: NBIC has pre-paid for 5 years, is renewal needed?
* SLA: WHAT ARE NEEDS?

== SurfConext IDP ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  All &amp; All
* Hosted by: NBIC
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: NBIC pays as we go. Future is under discussion.
* SLA: WHAT ARE NEEDS?

==BET Jenkins ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  All &amp; All
* Hosted by: NBIC
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: Engineering Team and close collaborators can use this.
* Funding position: NBIC pays as we go.
* SLA: WHAT ARE NEEDS?
 
== NBIC Galaxy ==

* Software/Data: NAME
* Short description: DESCRIPTION
* Field:  SubFIELD &amp; DISC COLOR 
* Hosted by: WHO
* Resources:  ### CORES, ### GB Memory, ### Disc (HPC NEEDS?)
* Access: WHO CAN DO WHAT
* Funding position: WHO PAYS UNTIL WHEN, is renewal needed?
* SLA: WHAT ARE NEEDS?

[[Category:Infrastructure]]</rev>
        </revisions>
      </page>
      <page pageid="288" ns="0" title="Standard Operating Procedure">
        <revisions>
          <rev contentformat="text/x-wiki" contentmodel="wikitext" xml:space="preserve">'''Standard Operating Procedure BYOD''' 


''Preparation''
* Contact Mascha Jansen (mascha.jansen@dtls.nl) if you are interested in organizing a BYOD
* Define the driving (research) question, and think about what data owners &amp; data experts need to be present
* Discuss &amp; allocate budget
* Invite data owners &amp; data experts
* Set date
* Book venue, hotel &amp; catering
* Register BYOD at the BYOD Wiki and at the beneficiary's communication channels
* Plan &amp; execute preparatory webinars, use the template on the wiki
* Create OSF project (https://osf.io/), invite participants, use eventbrite for registration




''Execution''
* Execute the programme
* Use the osf pages to document research questions and outcomes
* Select someone to write an outcome report, and set due date for report
* Store data in an open or closed repository


''Follow up''
* Send outcome report to DTL and other beneficiaries
* Store report
* Plan and execute teleconferences to follow up after 2-3 and 6-8 weeks, to tackle any problems data owners might encounter.</rev>
        </revisions>
      </page>
    </pages>
  </query>
</api>